J3_9I5V_022
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGGA*UAC*GGAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5V_022 not in the Motif Atlas
- Geometric match to J3_8CRE_079
- Geometric discrepancy: 0.1286
- The information below is about J3_8CRE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9I5V|1|a|A|942
9I5V|1|a|G|943
9I5V|1|a|G|944
9I5V|1|a|A|945
*
9I5V|1|a|U|1233
9I5V|1|a|A|1234
9I5V|1|a|C|1235
*
9I5V|1|a|G|1334
9I5V|1|a|G|1335
9I5V|1|a|A|1336
9I5V|1|a|U|1337
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain 14
- Ribosome-associated translation inhibitor RaiA
- Chain J
- Small ribosomal subunit protein uS9
- Chain i
- Small ribosomal subunit protein uS13
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