J3_9I5V_023
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- (PSU)UUAAUUC*GAGGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 9I5V|1|a|G|974, 9I5V|1|a|G|975, 9I5V|1|a|A|977
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5V_023 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.0914
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.3
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9I5V|1|a|PSU|954
9I5V|1|a|U|955
9I5V|1|a|U|956
9I5V|1|a|A|957
9I5V|1|a|A|958
9I5V|1|a|U|959
9I5V|1|a|U|960
9I5V|1|a|C|961
*
9I5V|1|a|G|972
9I5V|1|a|A|973
9I5V|1|a|G|974
9I5V|1|a|G|975
9I5V|1|a|A|976
9I5V|1|a|A|977
9I5V|1|a|C|978
9I5V|1|a|C|979
9I5V|1|a|U|980
9I5V|1|a|U|981
9I5V|1|a|A|982
9I5V|1|a|C|983
*
9I5V|1|a|G|1219
9I5V|1|a|G|1220
9I5V|1|a|C|1221
9I5V|1|a|G|1222
9I5V|1|a|A|1223
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain K
- Small ribosomal subunit protein uS10
- Chain g
- Small ribosomal subunit protein uS14
- Chain i
- Small ribosomal subunit protein uS13
- Chain p
- Small ribosomal subunit protein uS19
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