J3_9I78_002
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAAAUUUGAAAG*CGUUGUAAUUUGGAG*CGACG
- Length
- 32 nucleotides
- Bulged bases
- 9I78|1|L1|U|118, 9I78|1|L1|G|121, 9I78|1|L1|A|122, 9I78|1|L1|U|143, 9I78|1|L1|G|152
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|C|114
9I78|1|L1|A|115
9I78|1|L1|A|116
9I78|1|L1|A|117
9I78|1|L1|U|118
9I78|1|L1|U|119
9I78|1|L1|U|120
9I78|1|L1|G|121
9I78|1|L1|A|122
9I78|1|L1|A|123
9I78|1|L1|A|124
9I78|1|L1|G|125
*
9I78|1|L1|C|140
9I78|1|L1|G|141
9I78|1|L1|U|142
9I78|1|L1|U|143
9I78|1|L1|G|144
9I78|1|L1|U|145
9I78|1|L1|A|146
9I78|1|L1|A|147
9I78|1|L1|U|148
9I78|1|L1|U|149
9I78|1|L1|U|150
9I78|1|L1|G|151
9I78|1|L1|G|152
9I78|1|L1|A|153
9I78|1|L1|G|154
*
9I78|1|L1|C|256
9I78|1|L1|G|257
9I78|1|L1|A|258
9I78|1|L1|C|259
9I78|1|L1|G|260
Current chains
- Chain L1
- 26S rRNA
Nearby chains
- Chain L2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LG
- 60S ribosomal protein L8
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Lh
- Dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Li
- 60S ribosomal protein L36
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