J3_9I78_004
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAUAGCGCACAAGUAG*CGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 9I78|1|L1|U|336, 9I78|1|L1|A|344, 9I78|1|L2|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|C|333
9I78|1|L1|G|334
9I78|1|L1|A|335
9I78|1|L1|U|336
9I78|1|L1|A|337
9I78|1|L1|G|338
9I78|1|L1|C|339
9I78|1|L1|G|340
9I78|1|L1|C|341
9I78|1|L1|A|342
9I78|1|L1|C|343
9I78|1|L1|A|344
9I78|1|L1|A|345
9I78|1|L1|G|346
9I78|1|L1|U|347
9I78|1|L1|A|348
9I78|1|L1|G|349
*
9I78|1|L1|C|356
9I78|1|L1|G|357
9I78|1|L1|A|358
9I78|1|L1|A|359
9I78|1|L1|A|360
9I78|1|L1|G|361
*
9I78|1|L2|C|21
9I78|1|L2|U|22
9I78|1|L2|U|23
9I78|1|L2|G|24
Current chains
- Chain L1
- 26S rRNA
- Chain L2
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
Coloring options: