J3_9I78_010

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUAG*CGCAG*UCAAAU

Length

15 nucleotides

Bulged bases

9I78|1|L1|A|878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|A|810
9I78|1|L1|U|811
9I78|1|L1|A|812
9I78|1|L1|G|813
*
9I78|1|L1|C|845
9I78|1|L1|G|846
9I78|1|L1|C|847
9I78|1|L1|A|848
9I78|1|L1|G|849
*
9I78|1|L1|U|874
9I78|1|L1|C|875
9I78|1|L1|A|876
9I78|1|L1|A|877
9I78|1|L1|A|878
9I78|1|L1|U|879

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain LR

Ribosomal protein L19

Chain Lg

Ribosomal protein l34-like protein