J3_9I78_011
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UU*AGAAG*CAUUCGA
- Length
- 14 nucleotides
- Bulged bases
- 9I78|1|L1|A|1048, 9I78|1|L1|U|1077, 9I78|1|L1|U|1078
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|U|968
9I78|1|L1|U|969
*
9I78|1|L1|A|1045
9I78|1|L1|G|1046
9I78|1|L1|A|1047
9I78|1|L1|A|1048
9I78|1|L1|G|1049
*
9I78|1|L1|C|1075
9I78|1|L1|A|1076
9I78|1|L1|U|1077
9I78|1|L1|U|1078
9I78|1|L1|C|1079
9I78|1|L1|G|1080
9I78|1|L1|A|1081
Current chains
- Chain L1
- 26S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
- Chain Lb
- 60S ribosomal protein L29
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