J3_9I78_012

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GACG*CGCUAAGG*CAC

Length

15 nucleotides

Bulged bases

9I78|1|L1|U|1241, 9I78|1|L1|A|1242

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|G|1213
9I78|1|L1|A|1214
9I78|1|L1|C|1215
9I78|1|L1|G|1216
*
9I78|1|L1|C|1238
9I78|1|L1|G|1239
9I78|1|L1|C|1240
9I78|1|L1|U|1241
9I78|1|L1|A|1242
9I78|1|L1|A|1243
9I78|1|L1|G|1244
9I78|1|L1|G|1245
*
9I78|1|L1|C|1260
9I78|1|L1|A|1261
9I78|1|L1|C|1262

Current chains

Chain L1

26S rRNA

Nearby chains