J3_9I78_013

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9I78|1|L1|A|1465, 9I78|1|L1|U|1467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|C|1462
9I78|1|L1|G|1463
9I78|1|L1|A|1464
9I78|1|L1|A|1465
9I78|1|L1|G|1466
9I78|1|L1|U|1467
9I78|1|L1|G|1468
*
9I78|1|L1|C|1837
9I78|1|L1|A|1838
9I78|1|L1|A|1839
*
9I78|1|L1|U|1851
9I78|1|L1|C|1852
9I78|1|L1|U|1853
9I78|1|L1|G|1854

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain Lg

Ribosomal protein l34-like protein