J3_9I78_014
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAA*UCAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9I78|1|L1|U|1820, 9I78|1|L1|A|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|G|1471
9I78|1|L1|A|1472
9I78|1|L1|A|1473
9I78|1|L1|A|1474
*
9I78|1|L1|U|1817
9I78|1|L1|C|1818
9I78|1|L1|A|1819
9I78|1|L1|U|1820
9I78|1|L1|A|1821
9I78|1|L1|A|1822
9I78|1|L1|C|1823
*
9I78|1|L1|G|1832
9I78|1|L1|U|1833
9I78|1|L1|C|1834
Current chains
- Chain L1
- 26S rRNA
Nearby chains
- Chain L2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
Coloring options: