J3_9I78_015

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCGAUC*GGAAG*CA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|1509
9I78|1|L1|C|1510
9I78|1|L1|G|1511
9I78|1|L1|A|1512
9I78|1|L1|U|1513
9I78|1|L1|C|1514
*
9I78|1|L1|G|1571
9I78|1|L1|G|1572
9I78|1|L1|A|1573
9I78|1|L1|A|1574
9I78|1|L1|G|1575
*
9I78|1|L1|C|1592
9I78|1|L1|A|1593

Current chains

Chain L1

26S rRNA

Nearby chains

Chain L2

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L25-like protein

Chain Lg

Ribosomal protein l34-like protein

Chain Lk

60S ribosomal protein L38-like protein

Chain Ll

Ribosomal protein eL39