J3_9I78_017

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUUUUGCG*CAACU*GGGAAUAAUUC

Length

25 nucleotides

Bulged bases

9I78|1|L1|U|1609, 9I78|1|L1|A|1793, 9I78|1|L1|A|1794, 9I78|1|L1|U|1795, 9I78|1|L1|U|1799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|G|1604
9I78|1|L1|G|1605
9I78|1|L1|U|1606
9I78|1|L1|U|1607
9I78|1|L1|U|1608
9I78|1|L1|U|1609
9I78|1|L1|G|1610
9I78|1|L1|C|1611
9I78|1|L1|G|1612
*
9I78|1|L1|C|1621
9I78|1|L1|A|1622
9I78|1|L1|A|1623
9I78|1|L1|C|1624
9I78|1|L1|U|1625
*
9I78|1|L1|G|1790
9I78|1|L1|G|1791
9I78|1|L1|G|1792
9I78|1|L1|A|1793
9I78|1|L1|A|1794
9I78|1|L1|U|1795
9I78|1|L1|A|1796
9I78|1|L1|A|1797
9I78|1|L1|U|1798
9I78|1|L1|U|1799
9I78|1|L1|C|1800

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27

Chain Lg

Ribosomal protein l34-like protein