J3_9I78_019

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUUG*CUUAU*AGACAUU

Length

16 nucleotides

Bulged bases

9I78|1|L1|U|2477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|A|2395
9I78|1|L1|U|2396
9I78|1|L1|U|2397
9I78|1|L1|G|2398
*
9I78|1|L1|C|2475
9I78|1|L1|U|2476
9I78|1|L1|U|2477
9I78|1|L1|A|2478
9I78|1|L1|U|2479
*
9I78|1|L1|A|2550
9I78|1|L1|G|2551
9I78|1|L1|A|2552
9I78|1|L1|C|2553
9I78|1|L1|A|2554
9I78|1|L1|U|2555
9I78|1|L1|U|2556

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain LG

60S ribosomal protein L8

Chain LN

Ribosomal protein L15

Chain Li

60S ribosomal protein L36