J3_9I78_020
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGCU*AACUUCUGGAGUUAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 9I78|1|L1|C|2510, 9I78|1|L1|U|2511, 9I78|1|L1|U|2512, 9I78|1|L1|G|2515
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|G|2492
9I78|1|L1|G|2493
9I78|1|L1|C|2494
9I78|1|L1|U|2495
*
9I78|1|L1|A|2508
9I78|1|L1|A|2509
9I78|1|L1|C|2510
9I78|1|L1|U|2511
9I78|1|L1|U|2512
9I78|1|L1|C|2513
9I78|1|L1|U|2514
9I78|1|L1|G|2515
9I78|1|L1|G|2516
9I78|1|L1|A|2517
9I78|1|L1|G|2518
9I78|1|L1|U|2519
9I78|1|L1|U|2520
9I78|1|L1|A|2521
9I78|1|L1|A|2522
9I78|1|L1|G|2523
*
9I78|1|L1|C|2537
9I78|1|L1|G|2538
9I78|1|L1|A|2539
9I78|1|L1|C|2540
Current chains
- Chain L1
- 26S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein l30-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lp
- 60S ribosomal protein L43-like protein
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