J3_9I78_021

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGCC

Length

21 nucleotides

Bulged bases

9I78|1|L1|C|2719, 9I78|1|L1|C|2756

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|G|2610
9I78|1|L1|U|2611
9I78|1|L1|C|2612
*
9I78|1|L1|G|2713
9I78|1|L1|C|2714
9I78|1|L1|C|2715
9I78|1|L1|U|2716
9I78|1|L1|A|2717
9I78|1|L1|U|2718
9I78|1|L1|C|2719
9I78|1|L1|G|2720
9I78|1|L1|A|2721
9I78|1|L1|U|2722
9I78|1|L1|C|2723
9I78|1|L1|C|2724
*
9I78|1|L1|G|2752
9I78|1|L1|G|2753
9I78|1|L1|U|2754
9I78|1|L1|G|2755
9I78|1|L1|C|2756
9I78|1|L1|C|2757

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LQ

Ribosomal protein L18-like protein

Chain LT

60S ribosomal protein l21-like protein

Chain La

60S ribosomal protein L28-like protein

Chain Lo

60S ribosomal protein L44-like protein