J3_9I78_022
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9I78|1|L1|A|2662, 9I78|1|L1|A|2664
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|C|2623
9I78|1|L1|U|2624
9I78|1|L1|C|2625
*
9I78|1|L1|G|2649
9I78|1|L1|A|2650
9I78|1|L1|A|2651
*
9I78|1|L1|U|2660
9I78|1|L1|A|2661
9I78|1|L1|A|2662
9I78|1|L1|A|2663
9I78|1|L1|A|2664
9I78|1|L1|G|2665
Current chains
- Chain L1
- 26S rRNA
Nearby chains
- Chain L3
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LJ
- Putative ribosomal protein
- Chain LT
- 60S ribosomal protein l21-like protein
Coloring options: