J3_9I78_024

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAGACG*CCUAGCAGG*CGUAUUGCAAUUUAGA

Length

31 nucleotides

Bulged bases

9I78|1|L1|A|3126, 9I78|1|L1|G|3127, 9I78|1|L1|A|3160, 9I78|1|L1|G|3161, 9I78|1|L1|G|3164, 9I78|1|L1|A|3209, 9I78|1|L1|U|3211, 9I78|1|L1|C|3213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|3125
9I78|1|L1|A|3126
9I78|1|L1|G|3127
9I78|1|L1|A|3128
9I78|1|L1|C|3129
9I78|1|L1|G|3130
*
9I78|1|L1|C|3157
9I78|1|L1|C|3158
9I78|1|L1|U|3159
9I78|1|L1|A|3160
9I78|1|L1|G|3161
9I78|1|L1|C|3162
9I78|1|L1|A|3163
9I78|1|L1|G|3164
9I78|1|L1|G|3165
*
9I78|1|L1|C|3206
9I78|1|L1|G|3207
9I78|1|L1|U|3208
9I78|1|L1|A|3209
9I78|1|L1|U|3210
9I78|1|L1|U|3211
9I78|1|L1|G|3212
9I78|1|L1|C|3213
9I78|1|L1|A|3214
9I78|1|L1|A|3215
9I78|1|L1|U|3216
9I78|1|L1|U|3217
9I78|1|L1|U|3218
9I78|1|L1|A|3219
9I78|1|L1|G|3220
9I78|1|L1|A|3221

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain Lf

60S ribosomal protein l33-like protein