J3_9I78_026

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AC*GAUAAGU*AAUCU

Length

14 nucleotides

Bulged bases

9I78|1|L2|U|60, 9I78|1|L2|A|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L2|A|44
9I78|1|L2|C|45
*
9I78|1|L2|G|58
9I78|1|L2|A|59
9I78|1|L2|U|60
9I78|1|L2|A|61
9I78|1|L2|A|62
9I78|1|L2|G|63
9I78|1|L2|U|64
*
9I78|1|L2|A|96
9I78|1|L2|A|97
9I78|1|L2|U|98
9I78|1|L2|C|99
9I78|1|L2|U|100

Current chains

Chain L2

5.8S rRNA

Nearby chains

Chain LX

60S ribosomal protein L25-like protein

Chain Lh

Dolichyl-diphosphooligosaccharide--protein glycotransferase

Chain Lj

Ribosomal protein L37

Chain Ll

Ribosomal protein eL39