J3_9I88_001

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I88_001 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0776

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9I88|1|A|G|30
9I88|1|A|C|31
*
9I88|1|A|G|520
9I88|1|A|U|521
9I88|1|A|G|522
9I88|1|A|A|523
9I88|1|A|A|524
9I88|1|A|A|525
9I88|1|A|A|526
9I88|1|A|G|527
*
9I88|1|A|C|554
9I88|1|A|C|555

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein bL20

Chain X

Large ribosomal subunit protein uL24