J3_9I88_002
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAUAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9I88|1|A|U|549, 9I88|1|A|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I88_002 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.2357
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9I88|1|A|G|30
9I88|1|A|C|31
*
9I88|1|A|G|520
9I88|1|A|U|521
9I88|1|A|G|522
9I88|1|A|A|523
9I88|1|A|A|524
9I88|1|A|A|525
9I88|1|A|A|526
9I88|1|A|G|527
9I88|1|A|C|528
9I88|1|A|A|529
9I88|1|A|C|530
*
9I88|1|A|G|541
9I88|1|A|A|542
9I88|1|A|G|543
9I88|1|A|U|544
9I88|1|A|G|545
9I88|1|A|A|546
9I88|1|A|A|547
9I88|1|A|A|548
9I88|1|A|U|549
9I88|1|A|A|550
9I88|1|A|G|551
9I88|1|A|A|552
9I88|1|A|A|553
9I88|1|A|C|554
9I88|1|A|C|555
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain T
- Large ribosomal subunit protein bL20
- Chain V
- Large ribosomal subunit protein uL22
- Chain X
- Large ribosomal subunit protein uL24
Coloring options: