J3_9I88_003
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9I88|1|A|U|494, 9I88|1|A|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I88_003 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3746
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9I88|1|A|C|32
9I88|1|A|U|33
9I88|1|A|U|34
9I88|1|A|G|35
*
9I88|1|A|C|491
9I88|1|A|G|492
9I88|1|A|A|493
9I88|1|A|U|494
9I88|1|A|A|495
9I88|1|A|G|496
9I88|1|A|U|497
9I88|1|A|G|498
9I88|1|A|A|499
9I88|1|A|A|500
9I88|1|A|C|501
9I88|1|A|C|502
9I88|1|A|A|503
9I88|1|A|G|504
9I88|1|A|U|505
9I88|1|A|A|506
9I88|1|A|C|507
*
9I88|1|A|G|514
9I88|1|A|G|515
9I88|1|A|A|516
9I88|1|A|A|517
9I88|1|A|A|518
9I88|1|A|G|519
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 7
- Large ribosomal subunit protein bL34
- Chain I
- Large ribosomal subunit protein uL4
- Chain T
- Large ribosomal subunit protein bL20
- Chain W
- Large ribosomal subunit protein uL23
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