J3_9I88_004
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- ACGUUACUAACG*UGC*GAUUU
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I88_004 not in the Motif Atlas
- Geometric match to J3_4WF9_001
- Geometric discrepancy: 0.1286
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9I88|1|A|A|56
9I88|1|A|C|57
9I88|1|A|G|58
9I88|1|A|U|59
9I88|1|A|U|60
9I88|1|A|A|61
9I88|1|A|C|62
9I88|1|A|U|63
9I88|1|A|A|64
9I88|1|A|A|65
9I88|1|A|C|66
9I88|1|A|G|67
*
9I88|1|A|U|74
9I88|1|A|G|75
9I88|1|A|C|76
*
9I88|1|A|G|109
9I88|1|A|A|110
9I88|1|A|U|111
9I88|1|A|U|112
9I88|1|A|U|113
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein uL29
- Chain 7
- Large ribosomal subunit protein bL34
- Chain W
- Large ribosomal subunit protein uL23
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