J3_9I88_014
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UUG*CUAACC*GAGACAG
- Length
- 16 nucleotides
- Bulged bases
- 9I88|1|A|A|2225
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I88_014 not in the Motif Atlas
- Geometric match to J3_4WF9_007
- Geometric discrepancy: 0.2068
- The information below is about J3_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07703.1
- Basepair signature
- cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9I88|1|A|U|2118
9I88|1|A|U|2119
9I88|1|A|G|2120
*
9I88|1|A|C|2223
9I88|1|A|U|2224
9I88|1|A|A|2225
9I88|1|A|A|2226
9I88|1|A|C|2227
9I88|1|A|C|2228
*
9I88|1|A|G|2249
9I88|1|A|A|2250
9I88|1|A|G|2251
9I88|1|A|A|2252
9I88|1|A|C|2253
9I88|1|A|A|2254
9I88|1|A|G|2255
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL28
- Chain G
- Large ribosomal subunit protein uL2
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