J3_9I88_018

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I88_018 not in the Motif Atlas

Geometric match to J3_9DFE_018

Geometric discrepancy: 0.3552

The information below is about J3_9DFE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9I88|1|A|C|2816
9I88|1|A|A|2817
*
9I88|1|A|U|2826
9I88|1|A|A|2827
9I88|1|A|U|2828
9I88|1|A|A|2829
9I88|1|A|A|2830
9I88|1|A|G|2831
*
9I88|1|A|C|2909
9I88|1|A|G|2910
9I88|1|A|A|2911
9I88|1|A|A|2912
9I88|1|A|G|2913

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL3