J3_9I88_022
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9I88|1|a|C|49, 9I88|1|a|A|51, 9I88|1|a|A|52
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I88_022 not in the Motif Atlas
- Homologous match to J3_6CZR_058
- Geometric discrepancy: 0.1279
- The information below is about J3_6CZR_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.3
- Basepair signature
- cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9I88|1|a|G|47
9I88|1|a|C|48
9I88|1|a|C|49
9I88|1|a|U|50
9I88|1|a|A|51
9I88|1|a|A|52
9I88|1|a|U|53
*
9I88|1|a|A|367
9I88|1|a|G|368
9I88|1|a|G|369
9I88|1|a|G|370
9I88|1|a|A|371
9I88|1|a|A|372
9I88|1|a|U|373
9I88|1|a|C|374
9I88|1|a|U|375
*
9I88|1|a|A|401
9I88|1|a|G|402
9I88|1|a|C|403
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain m
- Small ribosomal subunit protein uS12
- Chain q
- Small ribosomal subunit protein bS16
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