J3_9I89_005

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

9I89|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I89_005 not in the Motif Atlas

Homologous match to J3_7A0S_003

Geometric discrepancy: 0.1748

The information below is about J3_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9I89|1|A|C|272
9I89|1|A|A|273
9I89|1|A|A|274
9I89|1|A|A|275
9I89|1|A|C|276
*
9I89|1|A|G|295
9I89|1|A|G|296
9I89|1|A|G|297
9I89|1|A|U|298
9I89|1|A|U|299
9I89|1|A|G|300
9I89|1|A|U|301
9I89|1|A|A|302
*
9I89|1|A|U|415
9I89|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains