J3_9I89_011

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

9I89|1|A|A|1653, 9I89|1|A|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I89|1|A|C|1342
9I89|1|A|U|1343
9I89|1|A|A|1344
9I89|1|A|A|1345
9I89|1|A|G|1346
*
9I89|1|A|C|1649
9I89|1|A|G|1650
9I89|1|A|C|1651
9I89|1|A|A|1652
9I89|1|A|A|1653
9I89|1|A|A|1654
9I89|1|A|C|1655
*
9I89|1|A|G|1664
9I89|1|A|U|1665
9I89|1|A|A|1666
9I89|1|A|G|1667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL34