J3_9I89_012

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

9I89|1|A|C|1382, 9I89|1|A|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I89_012 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1133

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9I89|1|A|U|1381
9I89|1|A|C|1382
9I89|1|A|G|1383
9I89|1|A|G|1384
9I89|1|A|G|1385
9I89|1|A|U|1386
9I89|1|A|C|1387
*
9I89|1|A|G|1418
9I89|1|A|A|1419
9I89|1|A|U|1420
9I89|1|A|A|1421
9I89|1|A|A|1422
*
9I89|1|A|U|1439
9I89|1|A|A|1440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein uL23