J3_9I89_015
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- GCU*ACUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9I89|1|A|U|2417, 9I89|1|A|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I89_015 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1862
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.2
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9I89|1|A|G|2309
9I89|1|A|C|2310
9I89|1|A|U|2311
*
9I89|1|A|A|2411
9I89|1|A|C|2412
9I89|1|A|U|2413
9I89|1|A|U|2414
9I89|1|A|A|2415
9I89|1|A|G|2416
9I89|1|A|U|2417
9I89|1|A|G|2418
9I89|1|A|A|2419
9I89|1|A|U|2420
9I89|1|A|C|2421
9I89|1|A|C|2422
*
9I89|1|A|G|2448
9I89|1|A|C|2449
9I89|1|A|U|2450
9I89|1|A|C|2451
9I89|1|A|A|2452
9I89|1|A|A|2453
9I89|1|A|C|2454
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL33A
- Chain 8
- Large ribosomal subunit protein bL35
- Chain O
- Large ribosomal subunit protein uL15
- Chain Z
- Large ribosomal subunit protein bL27
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