J3_9I89_025
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 9I89|1|a|U|731
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I89_025 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.3604
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9I89|1|a|U|680
9I89|1|a|G|681
*
9I89|1|a|C|725
9I89|1|a|A|726
9I89|1|a|C|727
9I89|1|a|C|728
9I89|1|a|A|729
9I89|1|a|G|730
9I89|1|a|U|731
9I89|1|a|G|732
9I89|1|a|G|733
*
9I89|1|a|C|740
9I89|1|a|G|741
9I89|1|a|A|742
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- Small ribosomal subunit protein bS6
- Chain l
- Small ribosomal subunit protein uS11
- Chain p
- Small ribosomal subunit protein uS15
- Chain s
- Small ribosomal subunit protein bS18
Coloring options: