J3_9I89_030
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- CUUG*CAG*CUUAUG
- Length
- 13 nucleotides
- Bulged bases
- 9I89|1|a|U|1225
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I89_030 not in the Motif Atlas
- Geometric match to J3_8B0X_008
- Geometric discrepancy: 0.1697
- The information below is about J3_8B0X_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84394.1
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9I89|1|a|C|1000
9I89|1|a|U|1001
9I89|1|a|U|1002
9I89|1|a|G|1003
*
9I89|1|a|C|1057
9I89|1|a|A|1058
9I89|1|a|G|1059
*
9I89|1|a|C|1221
9I89|1|a|U|1222
9I89|1|a|U|1223
9I89|1|a|A|1224
9I89|1|a|U|1225
9I89|1|a|G|1226
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain o
- Small ribosomal subunit protein uS14B
Coloring options: