J3_9I89_036

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

9I89|1|a|U|1251, 9I89|1|a|U|1313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I89_036 not in the Motif Atlas

Homologous match to J3_6CZR_026

Geometric discrepancy: 0.1706

The information below is about J3_6CZR_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9I89|1|a|C|1248
9I89|1|a|A|1249
9I89|1|a|A|1250
9I89|1|a|U|1251
9I89|1|a|G|1252
*
9I89|1|a|C|1307
9I89|1|a|U|1308
9I89|1|a|C|1309
9I89|1|a|A|1310
9I89|1|a|G|1311
9I89|1|a|U|1312
9I89|1|a|U|1313
9I89|1|a|C|1314
*
9I89|1|a|G|1345
9I89|1|a|C|1346
9I89|1|a|U|1347
9I89|1|a|G|1348

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

Small ribosomal subunit protein uS7

Chain n

Small ribosomal subunit protein uS13