J3_9IOT_021

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

9IOT|1|a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|a|G|46
9IOT|1|a|C|47
9IOT|1|a|C|48
9IOT|1|a|U|49
9IOT|1|a|A|50
9IOT|1|a|A|51
9IOT|1|a|C|52
*
9IOT|1|a|G|359
9IOT|1|a|G|360
9IOT|1|a|G|361
9IOT|1|a|G|362
9IOT|1|a|A|363
9IOT|1|a|A|364
9IOT|1|a|U|365
9IOT|1|a|A|366
9IOT|1|a|U|367
*
9IOT|1|a|A|393
9IOT|1|a|G|394
9IOT|1|a|C|395

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12

Chain p

Small ribosomal subunit protein bS16