J3_9IOT_024
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9IOT|1|a|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9IOT_024 not in the Motif Atlas
- Geometric match to J3_5J7L_003
- Geometric discrepancy: 0.0723
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9IOT|1|a|U|672
9IOT|1|a|A|673
*
9IOT|1|a|U|717
9IOT|1|a|A|718
9IOT|1|a|C|719
9IOT|1|a|C|720
9IOT|1|a|G|721
9IOT|1|a|G|722
9IOT|1|a|U|723
9IOT|1|a|G|724
9IOT|1|a|G|725
*
9IOT|1|a|C|732
9IOT|1|a|G|733
9IOT|1|a|G|734
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain f
- Small ribosomal subunit protein bS6, fully modified isoform
- Chain k
- Small ribosomal subunit protein uS11
- Chain o
- Small ribosomal subunit protein uS15
- Chain r
- Small ribosomal subunit protein bS18
- Chain u
- 30S ribosomal protein S21
Coloring options: