J3_9IOT_028
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9IOT|1|a|A|975, 9IOT|1|a|G|976, 9IOT|1|a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9IOT_028 not in the Motif Atlas
- Geometric match to J3_4LFB_004
- Geometric discrepancy: 0.0636
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9IOT|1|a|U|955
9IOT|1|a|U|956
9IOT|1|a|U|957
9IOT|1|a|A|958
9IOT|1|a|A|959
9IOT|1|a|U|960
9IOT|1|a|U|961
9IOT|1|a|C|962
*
9IOT|1|a|G|973
9IOT|1|a|A|974
9IOT|1|a|A|975
9IOT|1|a|G|976
9IOT|1|a|A|977
9IOT|1|a|A|978
9IOT|1|a|C|979
9IOT|1|a|C|980
9IOT|1|a|U|981
9IOT|1|a|U|982
9IOT|1|a|A|983
9IOT|1|a|C|984
*
9IOT|1|a|G|1221
9IOT|1|a|G|1222
9IOT|1|a|C|1223
9IOT|1|a|U|1224
9IOT|1|a|A|1225
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14
- Chain s
- Small ribosomal subunit protein uS19
- Chain v
- Ribosome hibernation promoting factor
Coloring options: