J3_9J1M_002
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GC*GUGAAAAGUAC*GAGUGAAAGAGUACC
- Length
- 28 nucleotides
- Bulged bases
- 9J1M|1|A|G|592, 9J1M|1|A|A|596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_002 not in the Motif Atlas
- Geometric match to J3_8P9A_047
- Geometric discrepancy: 0.1024
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9J1M|1|A|G|30
9J1M|1|A|C|31
*
9J1M|1|A|G|563
9J1M|1|A|U|564
9J1M|1|A|G|565
9J1M|1|A|A|566
9J1M|1|A|A|567
9J1M|1|A|A|568
9J1M|1|A|A|569
9J1M|1|A|G|570
9J1M|1|A|U|571
9J1M|1|A|A|572
9J1M|1|A|C|573
*
9J1M|1|A|G|584
9J1M|1|A|A|585
9J1M|1|A|G|586
9J1M|1|A|U|587
9J1M|1|A|G|588
9J1M|1|A|A|589
9J1M|1|A|A|590
9J1M|1|A|A|591
9J1M|1|A|G|592
9J1M|1|A|A|593
9J1M|1|A|G|594
9J1M|1|A|U|595
9J1M|1|A|A|596
9J1M|1|A|C|597
9J1M|1|A|C|598
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain Q
- Large ribosomal subunit protein bL20
- Chain S
- Large ribosomal subunit protein uL22
- Chain U
- Large ribosomal subunit protein uL24
Coloring options: