J3_9J1M_003
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 9J1M|1|A|U|34, 9J1M|1|A|U|537, 9J1M|1|A|U|545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_003 not in the Motif Atlas
- Geometric match to J3_4V9F_013
- Geometric discrepancy: 0.0877
- The information below is about J3_4V9F_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9J1M|1|A|C|32
9J1M|1|A|U|33
9J1M|1|A|U|34
9J1M|1|A|G|35
*
9J1M|1|A|C|534
9J1M|1|A|G|535
9J1M|1|A|A|536
9J1M|1|A|U|537
9J1M|1|A|A|538
9J1M|1|A|G|539
9J1M|1|A|C|540
9J1M|1|A|G|541
9J1M|1|A|G|542
9J1M|1|A|A|543
9J1M|1|A|U|544
9J1M|1|A|U|545
9J1M|1|A|A|546
9J1M|1|A|G|547
9J1M|1|A|U|548
9J1M|1|A|A|549
9J1M|1|A|C|550
*
9J1M|1|A|G|557
9J1M|1|A|G|558
9J1M|1|A|A|559
9J1M|1|A|A|560
9J1M|1|A|U|561
9J1M|1|A|G|562
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain E
- Large ribosomal subunit protein uL4
- Chain Q
- Large ribosomal subunit protein bL20
- Chain T
- Large ribosomal subunit protein uL23
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