J3_9J1M_007

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAAG*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

9J1M|1|A|U|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_007 not in the Motif Atlas

Geometric match to J3_4WF9_015

Geometric discrepancy: 0.118

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9J1M|1|A|G|379
9J1M|1|A|G|380
9J1M|1|A|A|381
9J1M|1|A|A|382
9J1M|1|A|G|383
*
9J1M|1|A|U|399
9J1M|1|A|G|400
9J1M|1|A|C|401
9J1M|1|A|C|402
9J1M|1|A|G|403
9J1M|1|A|U|404
9J1M|1|A|A|405
9J1M|1|A|G|406
9J1M|1|A|A|407
9J1M|1|A|C|408
*
9J1M|1|A|G|420
9J1M|1|A|G|421
9J1M|1|A|U|422
9J1M|1|A|A|423
9J1M|1|A|C|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24