J3_9J1M_009

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_009 not in the Motif Atlas

Geometric match to J3_9DFE_008

Geometric discrepancy: 0.0503

The information below is about J3_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9J1M|1|A|C|827
9J1M|1|A|A|828
9J1M|1|A|G|829
*
9J1M|1|A|C|861
9J1M|1|A|G|862
9J1M|1|A|A|863
9J1M|1|A|A|864
9J1M|1|A|C|865
*
9J1M|1|A|G|889
9J1M|1|A|A|890
9J1M|1|A|U|891
9J1M|1|A|G|892

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2