J3_9J1M_011

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGAAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9J1M|1|A|A|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_011 not in the Motif Atlas

Geometric match to J3_9DFE_010

Geometric discrepancy: 0.1513

The information below is about J3_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9J1M|1|A|C|1429
9J1M|1|A|G|1430
9J1M|1|A|A|1431
9J1M|1|A|A|1432
9J1M|1|A|A|1433
9J1M|1|A|G|1434
*
9J1M|1|A|C|1860
9J1M|1|A|A|1861
9J1M|1|A|G|1862
*
9J1M|1|A|C|1874
9J1M|1|A|A|1875
9J1M|1|A|A|1876
9J1M|1|A|G|1877

Current chains

Chain A

23S rRNA

Nearby chains