J3_9J1M_012

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9J1M|1|A|A|1844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_012 not in the Motif Atlas

Geometric match to J3_9DFE_011

Geometric discrepancy: 0.1998

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9J1M|1|A|C|1437
9J1M|1|A|A|1438
9J1M|1|A|A|1439
9J1M|1|A|G|1440
*
9J1M|1|A|C|1840
9J1M|1|A|C|1841
9J1M|1|A|C|1842
9J1M|1|A|A|1843
9J1M|1|A|A|1844
9J1M|1|A|A|1845
9J1M|1|A|C|1846
*
9J1M|1|A|G|1855
9J1M|1|A|U|1856
9J1M|1|A|G|1857

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34