J3_9J1M_015

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9J1M|1|A|A|2435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_015 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.0938

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9J1M|1|A|U|2328
9J1M|1|A|U|2329
9J1M|1|A|G|2330
*
9J1M|1|A|C|2433
9J1M|1|A|U|2434
9J1M|1|A|A|2435
9J1M|1|A|A|2436
9J1M|1|A|C|2437
*
9J1M|1|A|G|2461
9J1M|1|A|G|2462
9J1M|1|A|A|2463
9J1M|1|A|C|2464
9J1M|1|A|A|2465
9J1M|1|A|G|2466

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain H

Large ribosomal subunit protein bL9

Chain X

Large ribosomal subunit protein bL28