J3_9J1M_018

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9J1M|1|A|A|2756, 9J1M|1|A|U|2757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_018 not in the Motif Atlas

Geometric match to J3_9DFE_017

Geometric discrepancy: 0.0609

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9J1M|1|A|C|2755
9J1M|1|A|A|2756
9J1M|1|A|U|2757
9J1M|1|A|C|2758
*
9J1M|1|A|G|2783
9J1M|1|A|U|2784
9J1M|1|A|U|2785
*
9J1M|1|A|A|2799
9J1M|1|A|U|2800
9J1M|1|A|U|2801
9J1M|1|A|A|2802
9J1M|1|A|A|2803
9J1M|1|A|A|2804
9J1M|1|A|G|2805

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain K

Large ribosomal subunit protein uL14