J3_9J1M_027
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_027 not in the Motif Atlas
- Geometric match to J3_5J7L_052
- Geometric discrepancy: 0.1132
- The information below is about J3_5J7L_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
9J1M|1|a|C|929
9J1M|1|a|A|930
9J1M|1|a|A|931
9J1M|1|a|G|932
*
9J1M|1|a|C|1336
9J1M|1|a|U|1337
9J1M|1|a|A|1338
9J1M|1|a|G|1339
9J1M|1|a|U|1340
9J1M|1|a|A|1341
9J1M|1|a|A|1342
*
9J1M|1|a|U|1365
9J1M|1|a|G|1366
9J1M|1|a|A|1367
9J1M|1|a|A|1368
9J1M|1|a|U|1369
9J1M|1|a|A|1370
9J1M|1|a|C|1371
9J1M|1|a|G|1372
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- Small ribosomal subunit protein uS7
- Chain i
- Small ribosomal subunit protein uS9
Coloring options: