J3_9J1M_028

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGGA*UAC*GGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_028 not in the Motif Atlas

Geometric match to J3_4LFB_003

Geometric discrepancy: 0.106

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9J1M|1|a|C|936
9J1M|1|a|G|937
9J1M|1|a|G|938
9J1M|1|a|A|939
*
9J1M|1|a|U|1227
9J1M|1|a|A|1228
9J1M|1|a|C|1229
*
9J1M|1|a|G|1329
9J1M|1|a|G|1330
9J1M|1|a|A|1331
9J1M|1|a|G|1332

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

Small ribosomal subunit protein uS9

Chain m

Small ribosomal subunit protein uS13