J3_9J1M_032
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_032 not in the Motif Atlas
- Geometric match to J3_5J7L_008
- Geometric discrepancy: 0.1317
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9J1M|1|a|C|1054
9J1M|1|a|G|1055
9J1M|1|a|U|1056
9J1M|1|a|C|1057
9J1M|1|a|A|1058
9J1M|1|a|G|1059
*
9J1M|1|a|C|1098
9J1M|1|a|G|1099
9J1M|1|a|C|1100
9J1M|1|a|A|1101
9J1M|1|a|A|1102
9J1M|1|a|C|1103
9J1M|1|a|C|1104
*
9J1M|1|a|G|1179
9J1M|1|a|A|1180
9J1M|1|a|U|1181
9J1M|1|a|G|1182
9J1M|1|a|A|1183
9J1M|1|a|C|1184
9J1M|1|a|G|1185
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain e
- Small ribosomal subunit protein uS5
- Chain g
- Small ribosomal subunit protein uS7
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14B
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