J3_9J1M_033

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_033 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.3671

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9J1M|1|a|U|1064
9J1M|1|a|G|1065
*
9J1M|1|a|U|1074
9J1M|1|a|G|1075
9J1M|1|a|U|1076
9J1M|1|a|U|1077
9J1M|1|a|G|1078
*
9J1M|1|a|C|1089
9J1M|1|a|G|1090
9J1M|1|a|C|1091
9J1M|1|a|A|1092
9J1M|1|a|A|1093

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

Small ribosomal subunit protein uS5