J3_9J1M_035
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- UGU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9J1M|1|a|U|1175
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_035 not in the Motif Atlas
- Geometric match to J3_4LFB_018
- Geometric discrepancy: 0.1716
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9J1M|1|a|U|1107
9J1M|1|a|G|1108
9J1M|1|a|U|1109
*
9J1M|1|a|A|1147
9J1M|1|a|G|1148
9J1M|1|a|A|1149
9J1M|1|a|C|1150
9J1M|1|a|U|1151
9J1M|1|a|G|1152
9J1M|1|a|C|1153
*
9J1M|1|a|G|1167
9J1M|1|a|A|1168
9J1M|1|a|G|1169
9J1M|1|a|G|1170
9J1M|1|a|A|1171
9J1M|1|a|A|1172
9J1M|1|a|G|1173
9J1M|1|a|G|1174
9J1M|1|a|U|1175
9J1M|1|a|G|1176
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14B
Coloring options: