J3_9J1M_036

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAAUG*CUCAGUUC*GUCG

Length

17 nucleotides

Bulged bases

9J1M|1|a|U|1232, 9J1M|1|a|U|1294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_036 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.246

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9J1M|1|a|C|1229
9J1M|1|a|A|1230
9J1M|1|a|A|1231
9J1M|1|a|U|1232
9J1M|1|a|G|1233
*
9J1M|1|a|C|1288
9J1M|1|a|U|1289
9J1M|1|a|C|1290
9J1M|1|a|A|1291
9J1M|1|a|G|1292
9J1M|1|a|U|1293
9J1M|1|a|U|1294
9J1M|1|a|C|1295
*
9J1M|1|a|G|1326
9J1M|1|a|U|1327
9J1M|1|a|C|1328
9J1M|1|a|G|1329

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

Small ribosomal subunit protein uS7

Chain m

Small ribosomal subunit protein uS13