J3_9JMK_001

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JMK_001 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.1319

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9JMK|1|A|G|30
9JMK|1|A|C|31
*
9JMK|1|A|G|474
9JMK|1|A|C|475
9JMK|1|A|G|476
9JMK|1|A|A|477
9JMK|1|A|A|478
9JMK|1|A|A|479
9JMK|1|A|A|480
9JMK|1|A|G|481
*
9JMK|1|A|C|509
9JMK|1|A|C|510

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain U

50S ribosomal protein L24