J3_9JMK_005

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9JMK|1|A|U|686, 9JMK|1|A|A|792, 9JMK|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JMK_005 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1885

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

9JMK|1|A|U|683
9JMK|1|A|G|684
9JMK|1|A|A|685
9JMK|1|A|U|686
9JMK|1|A|C|687
9JMK|1|A|U|688
9JMK|1|A|A|689
*
9JMK|1|A|U|773
9JMK|1|A|G|774
9JMK|1|A|G|775
*
9JMK|1|A|C|791
9JMK|1|A|A|792
9JMK|1|A|A|793
9JMK|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2